#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # # $RCSfile: srsdb.i,v $ # $Revision: 1.112.2.3.2.4 $ # $Date: 2002/05/20 17:50:22 $ # $Author: hilbers $ # #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ## utils:: $gunzip='/usr/local/bin/gunzip -f ' # file:"SRSDB:loader.i" file:"SRSSITE:localviews.i" file:"SRSDB:embl.i" file:"SRSDB:genbank.i" file:"SRSDB:swissprot.i" file:"SRSDB:pir.i" file:"SRSDB:genpept.i" file:"SRSDB:ensembl.i" file:"SRSDB:oglyc.i" file:"SRSDB:nrl3d.i" file:"SRSDB:aageneseq.i" file:"SRSDB:nageneseq.i" file:"SRSDB:imgt.i" file:"SRSDB:prosite.i" file:"SRSDB:prositedoc.i" file:"SRSDB:prints.i" file:"SRSDB:blocks.i" file:"SRSDB:prodom.i" file:"SRSDB:domo.i" file:"SRSDB:pfam.i" file:"SRSDB:pfamhmm.i" file:"SRSDB:pfamseed.i" file:"SRSDB:swisspfam.i" file:"SRSDB:enzyme.i" file:"SRSDB:rebase.i" file:"SRSDB:dummylibs.i" file:"SRSDB:geneticcode.i" file:"SRSDB:rebcomm.i" file:"SRSDB:taxonomy.i" file:"SRSDB:epd.i" file:"SRSDB:tfsite.i" file:"SRSDB:tfcell.i" file:"SRSDB:tffactor.i" file:"SRSDB:tfclass.i" file:"SRSDB:tfgene.i" file:"SRSDB:tfmatrix.i" file:"SRSDB:locuslink.i" file:"SRSDB:omim.i" file:"SRSDB:unigene.i" file:"SRSDB:uniseq.i" file:"SRSDB:uniest.i" file:"SRSDB:dbest.i" file:"SRSDB:dbsts.i" file:"SRSDB:dbgss.i" file:"SRSDB:pdb.i" file:"SRSDB:pdbfinder.i" file:"SRSDB:dssp.i" file:"SRSDB:hssp.i" file:"SRSDB:fssp.i" file:"SRSDB:rhdb.i" file:"SRSDB:rhmap.i" file:"SRSDB:rhexp.i" file:"SRSDB:rhpanel.i" file:"SRSDB:lenzyme.i" file:"SRSDB:lcompound.i" file:"SRSDB:pathway.i" # XML databases #file:"SRSDB:interproXML.i" file:"SRSDB:interpro.i" # uncomment the applications you want to install #file:"SRSDB:fasta.i" #file:"SRSDB:nfasta.i" #file:"SRSDB:tfasta.i" #file:"SRSDB:fastx.i" #file:"SRSDB:tfastx.i" #file:"SRSDB:fasty.i" #file:"SRSDB:tfasty.i" #file:"SRSDB:ssearch.i" #file:"SRSDB:blastp.i" #file:"SRSDB:blastn.i" #file:"SRSDB:blastx.i" #file:"SRSDB:tblastn.i" #file:"SRSDB:tblastx.i" #file:"SRSDB:psiblast.i" #file:"SRSDB:clustalw.i" #file:"SRSDB:nclustalw.i" #file:"SRSDB:prositesearch.i" #file:"SRSDB:restrictionmap.i" #file:"SRSDB:hmmpfam.i" #file:"SRSDB:hmmsearch.i" #file:"SRSDB:hmmbuild.i" #file:"SRSDB:printscan.i" file:"SRSDB:srsfaq.i" file:"SRSDB:srsbooks.i" file:"SRSDB:srserrors.i" file:"SRSDB:classcom.i" file:"SRSDB:srsapi.i" #file:"SRSDB:prismastatus.i" #file:"SRSDB:prismatime.i" #file:"SRSDB:jobs.i" file:"SRSDB:userdna.i" file:"SRSDB:userprotein.i" ######################################## # Databanks: TRRD5 # Last-edition: 20020227 file:"SRSSITE:trrdgenes4.i" file:"SRSSITE:trrdsites4.i" file:"SRSSITE:trrdbib4.i" file:"SRSSITE:trrdfactors4.i" file:"SRSSITE:trrdexp4.i" file:"SRSSITE:trrdunits4.i" file:"SRSSITE:trrdlcr.i" file:"SRSSITE:promoters.i" # Databanks: GeneNet # Last-edition: 20070205 file:"SRSSITE:gn_cell.i" file:"SRSSITE:gn_gene.i" file:"SRSSITE:gn_rna.i" file:"SRSSITE:gn_bibliography.i" file:"SRSSITE:gn_compartment.i" file:"SRSSITE:gn_process.i" file:"SRSSITE:gn_relation.i" file:"SRSSITE:gn_substance.i" file:"SRSSITE:gn_protein.i" file:"SRSSITE:gn_scheme.i" file:"SRSSITE:gn_scheme_constant.i" file:"SRSSITE:gn_scheme_entity.i" file:"SRSSITE:gn_scheme_reaction.i" file:"SRSSITE:gn_scheme_relation.i" file:"SRSSITE:gn_expert.i" file:"SRSSITE:gn_organism.i" # Databanks: GERD # Last-edition: 20010226 ##file:"SRSSITE:gerd.i" # Databanks: LEADER # Last-edition: 20010226 file:"SRSSITE:leader_sq.i" file:"SRSSITE:leader_sci.i" file:"SRSSITE:leader_ref.i" file:"SRSSITE:leader_why.i" file:"SRSSITE:leader_kn.i" # Databanks: Samples # Last-edition: 20010226 file:"SRSSITE:samples.i" file:"SRSSITE:matrix.i" file:"SRSSITE:consensus.i" file:"SRSSITE:aligned.i" file:"SRSSITE:features.i" file:"SRSSITE:profiles.i" file:"SRSSITE:profile_list.i" file:"SRSSITE:sample_prot.i" # Databanks: act # Last-edition: 20010226 file:"SRSSITE:activity.i" file:"SRSSITE:scientist.i" file:"SRSSITE:reference.i" file:"SRSSITE:weight.i" file:"SRSSITE:property.i" file:"SRSSITE:knowledge.i" # Databanks: enpdb # Last-edition: 20010226 file:"SRSSITE:enpdb.i" # Databanks: selex # Last-edition: 20010226 file:"SRSSITE:selex_db.i" file:"SRSSITE:selex_bib.i" file:"SRSSITE:selex_tools.i" # Databanks: aspd # Last-edition: 20010504 file:"SRSSITE:aspd_align.i" file:"SRSSITE:aspd_ref.i" #file:"SRSSITE:aspd_prot.i" # Databanks: pdbsite # Last-edition: 20010405 file:"SRSSITE:pdbsite.i" # # Databanks: MEASURE # Last-edition: 20010226 file:"SRSSITE:system.i" file:"SRSSITE:crosstest.i" # # Databanks DB_EIR # Last-edition: 20120411 file:"SRSSITE:db_eir.i" # # Databanks: rSNP # Last-edition: 20010226 file:"SRSSITE:rsnp_db.i" file:"SRSSITE:rsnp_bib.i" # # Databanks: trsig # Last-edition: 20130927 file:"SRSSITE:trsig_exp.i" file:"SRSSITE:trsig_long.i" file:"SRSSITE:trsig_obj.i" file:"SRSSITE:trsig_seq.i" file:"SRSSITE:trsig_product.i" # # Databanks: transig # Last-edition: 20130927 file:"SRSSITE:transig_obj.i" file:"SRSSITE:transig_enh.i" # Databanks: prof_pat # Last-edition: 20011114 #file:"SRSSITE:prof_pat_aln.i" #file:"SRSSITE:prof_pat_bnk.i" # Databanks: nucleosome # Last-edition: 20040708 by pnl file:"SRSSITE:nucleosome.i" # Databanks: tgp # Last-edition: 20080627 file:"SRSSITE:tgp_gene.i" file:"SRSSITE:tgp_promoter.i" file:"SRSSITE:tgp_sequence.i" ## Databanks: prg # ## Last-edition: 20150910 # file:"SRSSITE:prg_gene.i" file:"SRSSITE:prg_allele.i" file:"SRSSITE:prg_sequence.i" # Databanks: biotech # Last-edition: 20060424 file:"SRSSITE:biotech_product.i" file:"SRSSITE:biotech_strain.i" # Databanks: GenSensor # Last-edition: 20070205 file:"SRSSITE:sensorgene.i" file:"SRSSITE:sensorbib.i" file:"SRSSITE:sensorinductor.i" file:"SRSSITE:sensorpromoter.i" file:"SRSSITE:sensorfactor.i" file:"SRSSITE:sensorsite.i" # Databanks: ConSensor # Last-edition: 20070205 file:"SRSSITE:constructionbib.i" file:"SRSSITE:construction.i" file:"SRSSITE:csinductor.i" # Databank: PlantBioVis # Last-edition: 20080409 file:"SRSSITE:plantbiovis.i" # Databank: CircadianRhythm # Last-edition: 20130805 #file:"SRSSITE:crbib.i" #file:"SRSSITE:crgene.i" ################################################## ## DATA ROOT VARIABLES ## ## These variables define common locations for the databases. ## Edit/add things to your liking - You can use them in the ## database location section below ################################################## #$dataRoot = "/srsdata/flatfiles" $GCGdataRoot = "/data/gcg" # $Application_Root is used as path, prepending the # application name in most application definitions # (fasta.i, blastp.i etc). If you apps are not in the # normal search path, you can put a value in here, # but don't forget a trailin '/' $Application_Root = "" $MatrixRoot = "/data/appl/wash-blast2/matrix" $dataRoot2 = "($Env:SRSROOT)/data" $indexRoot = "($Env:SRSROOT)/index" $ApplResults = "." $ApplIndex = "." ##################################################### # # Location of the database flatfiles. Uncomment databases which # have and specify the correct location of the database files. # # ##################################################### $MySite=$Site:[name:unix libs:{ # The major sequence databases # $LibLoc:[$EMBL_DB] # $LibLoc:[$EMBLREL_DB dir:"$dataRoot/embl/" # offDir:"$dataRoot/embl_tmp/"] # $LibLoc:[$EMBLNEW_DB dir:"$dataRoot/emblnew/" # offDir:"$dataRoot/emblnew_tmp/"] # $LibLoc:[$GENBANK_DB] # $LibLoc:[$GENBANKREL_DB dir:"$dataRoot/genbank/" # offDir:"$dataRoot/genbank_tmp/"] # $LibLoc:[$GENBANKNEW_DB dir:"$dataRoot/genbanknew/" # offDir:"$dataRoot/genbanknew_tmp/" ] # $LibLoc:[$REFSEQ_DB dir:"$dataRoot/refseq/" # offDir:"$dataRoot/refseq_tmp/" ] # $LibLoc:[$SWALL_DB] # $LibLoc:[$TREMBL_DB] # $LibLoc:[$SWISSPROT_DB] # $LibLoc:[$SWISSPROTREL_DB dir:"$dataRoot/swissprot/" # offDir:"$dataRoot/swissprot_tmp/"] # $LibLoc:[$SWISSNEW_DB dir:"$dataRoot/swissnew/" # offDir:"$dataRoot/swissnew_tmp/"] # $LibLoc:[$SPTREMBL_DB dir:"$dataRoot/sptrembl/" # offDir:"$dataRoot/sptrembl_tmp/"] # $LibLoc:[$REMTREMBL_DB dir:"$dataRoot/remtrembl/" # offDir:"$dataRoot/remtrembl_tmp/"] # $LibLoc:[$TREMBLNEW_DB dir:"$dataRoot/tremblnew/" # offDir:"$dataRoot/tremblnew_tmp/"] # $LibLoc:[$PIR_DB dir:"$dataRoot/pir/" # offDir:"$dataRoot/pir_tmp/"] # $LibLoc:[$GENPEPT_DB] # $LibLoc:[$GENPEPTREL_DB dir:"$dataRoot/genpept/" # offDir:"$dataRoot/genpept_tmp/"] # $LibLoc:[$GENPEPTNEW_DB dir:"$dataRoot/genpeptnew/" # offDir:"$dataRoot/genpeptnew_tmp/" ] # specialised sequence databases # $LibLoc:[$OGLYC_DB dir:"$dataRoot/data/oglyc/"] # $LibLoc:[$NRL3D_DB dir:"$dataRoot/nrl/" # offDir:"$dataRoot/nrl_tmp/"] # $LibLoc:[$NAGENESEQ_DB dir:"$dataRoot/geneseq/" offDir:"$dataRoot/geneseq_tmp/"] # $LibLoc:[$AAGENESEQ_DB dir:"$dataRoot/geneseq/" offDir:"$dataRoot/geneseq_tmp/"] # $LibLoc:[$NAGENESEQTAR_DB dir:"$dataRoot/geneseq_tmp/" offDir:"$dataRoot/geneseq_tmp/"] # $LibLoc:[$AAGENESEQTAR_DB dir:"$dataRoot/geneseq_tmp/" offDir:"$dataRoot/geneseq_tmp/"] # $LibLoc:[$IMGT_DB dir:"$dataRoot/imgt/" # offDir:"$dataRoot/imgt_tmp/"] # $LibLoc:[$ENSEMBL_DB dir:"$dataRoot/ensembl/" # offDir:"$dataRoot/ensembl_tmp/"] # protein domains/patterns/alignments etc # $LibLoc:[$PROSITE_DB dir:"$dataRoot/prosite/" # offDir:"$dataRoot/prosite_tmp/"] # $LibLoc:[$PROSITEDOC_DB dir:"$dataRoot/prosite/" # offDir:"$dataRoot/prosite_tmp/"] # $LibLoc:[$PRINTS_DB dir:"$dataRoot/prints/" # offDir:"$dataRoot/prints_tmp/"] # $LibLoc:[$BLOCKS_DB dir:"$dataRoot/blocks/" offDir:"$dataRoot/blocks_tmp/"] # $LibLoc:[$PRODOM_DB dir:"$dataRoot/prodom/" # offDir:"$dataRoot/prodom_tmp/"] # $LibLoc:[$DOMO_DB dir:"$dataRoot/domo/"] # $LibLoc:[$PFAMA_DB dir:"$dataRoot/pfam/" offDir:"$dataRoot/pfam_tmp/"] # $LibLoc:[$PFAMB_DB dir:"$dataRoot/pfam/" offDir:"$dataRoot/pfam_tmp/"] # $LibLoc:[$PFAMHMM_DB dir:"$dataRoot/pfam/" offDir:"$dataRoot/pfam_tmp/"] # $LibLoc:[$PFAMSEED_DB dir:"$dataRoot/pfam/" offDir:"$dataRoot/pfam_tmp/"] # $LibLoc:[$SWISSPFAM_DB dir:"$dataRoot/pfam/" offDir:"$dataRoot/pfam_tmp/"] # various stuff # $LibLoc:[$ENZYME_DB dir:"$dataRoot/enzyme/" # offDir:"$dataRoot/enzyme_tmp/"] # $LibLoc:[$REBASE_DB dir:"$dataRoot/rebase/" # offDir:"$dataRoot/rebase_tmp/"] # $LibLoc:[$REBCOMM_DB dir:"$dataRoot/rebase/" # offDir:"$dataRoot/rebase_tmp/"] # $LibLoc:[$TACGDATA_DB dir:"$dataRoot/rebase/" # offDir:"$dataRoot/rebase_tmp/" # restrictTo:$Dummy_user] # $LibLoc:[$GENETICCODE_DB dir:"$dataRoot/geneticcode/"] # $LibLoc:[$TAXONOMY_DB dir:"$dataRoot/taxonomy/" # offDir:"$dataRoot/taxonomy_tmp/" ] # $LibLoc:[$EPD_DB dir:"$dataRoot/epd/" # offDir:"$dataRoot/epd_tmp/" ] # the transfac files # $LibLoc:[$TFSITE_DB dir:"$dataRoot/transfac/"] # $LibLoc:[$TFCELL_DB dir:"$dataRoot/transfac/"] # $LibLoc:[$TFFACTOR_DB dir:"$dataRoot/transfac/"] # $LibLoc:[$TFCLASS_DB dir:"$dataRoot/transfac/"] # $LibLoc:[$TFGENE_DB dir:"$dataRoot/transfac/"] # $LibLoc:[$TFMATRIX_DB dir:"$dataRoot/transfac/"] # genetics, ests etc. # $LibLoc:[$LOCUSLINK_DB dir:"$dataRoot/locuslink/" # offDir:"$dataRoot/locuslink_tmp/" ] # $LibLoc:[$OMIM_DB dir:"$dataRoot/omim/" offDir:"$dataRoot/omim_tmp/" ] # $LibLoc:[$UNIGENE_DB dir:"$dataRoot/unigene/" offDir:"$dataRoot/unigene_tmp/"] # $LibLoc:[$UNISEQ_DB dir:"$dataRoot/unigene/" offDir:"$dataRoot/unigene_tmp/"] # $LibLoc:[$UNIEST_DB dir:"$dataRoot/unigene/" offDir:"$dataRoot/unigene_tmp/"] # $LibLoc:[$DBEST_DB dir:"$dataRoot/dbest/" offDir:"$dataRoot/dbest_tmp/"] # $LibLoc:[$DBSTS_DB dir:"$dataRoot/dbsts/" offDir:"$dataRoot/dbsts_tmp/"] # $LibLoc:[$DBGSS_DB dir:"$dataRoot/dbgss/" offDir:"$dataRoot/dbgss_tmp/"] # $LibLoc:[$DBHTG_DB dir:"$dataRoot/dbhtg/" offDir:"$dataRoot/dbhtg_tmp/"] # radiation hybridization # $LibLoc:[$RHPANEL_DB dir:"$dataRoot/rhdb/" offDir:"$dataRoot/rhdb_tmp/"] # $LibLoc:[$RHMAP_DB dir:"$dataRoot/rhdb/" offDir:"$dataRoot/rhdb_tmp/"] # $LibLoc:[$RHEXP_DB dir:"$dataRoot/rhdb/" offDir:"$dataRoot/rhdb_tmp/"] # $LibLoc:[$RHDB_DB dir:"$dataRoot/rhdb/" offDir:"$dataRoot/rhdb_tmp/"] # metabolic pathways # $LibLoc:[$LENZYME_DB dir:"$dataRoot/lenzyme/" # offDir:"$dataRoot/lenzyme_tmp/"] # $LibLoc:[$LCOMPOUND_DB dir:"$dataRoot/lcompound/" # offDir:"$dataRoot/lcompound_tmp/"] # $LibLoc:[$PATHWAYTAR_DB dir:"$dataRoot/pathway/" offDir:"$dataRoot/pathway/"] # $LibLoc:[$PATHWAY_DB dir:"$dataRoot/pathway/" offDir:"$dataRoot/pathway/"] # structural libs # $LibLoc:[$PDB_DB dir:"$dataRoot/pdb/" offDir:"$dataRoot/pdb/"] # $LibLoc:[$DSSP_DB dir:"$dataRoot/dssp/" offDir:"$dataRoot/dssp/"] # $LibLoc:[$HSSP_DB dir:"$dataRoot/hssp/" offDir:"$dataRoot/hssp/"] # $LibLoc:[$FSSP_DB dir:"$dataRoot/fssp/" offDir:"$dataRoot/fssp/"] # $LibLoc:[$PDBFINDER_DB dir:"$dataRoot/pdbfinder/" offDir:"$dataRoot/pdbfinder_tmp/"] # application results # To use these, also uncomment the appropriate "file:applicationname.i" # line(s) above. Note that "file:fasta.i" is needed with all fasta programs # AND blast programs, and that "file:blastp.i" is needed with all # blast programs. # You will also need to uncomment the applications in the # datatype seection of srsgen.i # # # $LibLoc:[$BLASTP_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$BLASTX_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$BLASTN_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$TBLASTX_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$TBLASTN_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$PSIBLAST_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$FASTA_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$NFASTA_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$FASTX_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$FASTY_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$TFASTA_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$TFASTX_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$TFASTY_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$SSEARCH_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$CLUSTALW_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$NCLUSTALW_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$PROSITESEARCH_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$RESTRICTIONMAP_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$HMMSEARCH_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$HMMPFAM_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$HMMBUILD_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$PRINTSCAN_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$WF_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # XML databases # $LibLoc:[$INTERPROXML_DB dir:"$dataRoot2/interpro/"] # $LibLoc:[$INTERPRO_DB dir:"$dataRoot2/interpro/"] # Users can submit data to these two databases, to make them available # to applications. If you want to use them, also uncomment the # the "file:userprotein.i" and "file:userdna.i" lines above # # $LibLoc:[$USERDNA_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[$USERPROTEIN_DB dir:"$ApplResults/" indexDir:"$ApplIndex/"] # $LibLoc:[ $JOBS_DB dir:"$dataRoot2/jobs/" ] # $LibLoc:[ $PRISMASTATUS_DB dir:"($Env:SRSROOT)/prisma/" ] # $LibLoc:[ $PRISMATIME_DB dir:"($Env:SRSROOT)/prisma/" ] # srs FAQs data # $LibLoc:[$SRSFAQ_DB dir:"($Env:SRSWWW)/faq/"] $LibLoc:[$SRSBOOKS_DB dir:"($Env:SRSWWW)/doc/"] $LibLoc:[$SRSERRCODES_DB dir:"($Env:SRSETC)/"] $LibLoc:[$CLASSCOM_DB dir:"($Env:SRSWWW)/man/"] # $LibLoc:[$SRSAPI_DB dir:"($Env:SRSWWW)/man/srsapi/"] ######################################## # Databanks: TRRD5 # Last-edition: 20020227 $LibLoc:[$TRRDGENES4_DB dir:"$dataRoot2/TRRD5/" indexDir:"$indexRoot/TRRD5/"] $LibLoc:[$TRRDSITES4_DB dir:"$dataRoot2/TRRD5/" indexDir:"$indexRoot/TRRD5/"] $LibLoc:[$TRRDEXP4_DB dir:"$dataRoot2/TRRD5/" indexDir:"$indexRoot/TRRD5/"] $LibLoc:[$TRRDFACTORS4_DB dir:"$dataRoot2/TRRD5/" indexDir:"$indexRoot/TRRD5/"] $LibLoc:[$TRRDBIB4_DB dir:"$dataRoot2/TRRD5/" indexDir:"$indexRoot/TRRD5/"] $LibLoc:[$TRRDUNITS4_DB dir:"$dataRoot2/TRRD5/" indexDir:"$indexRoot/TRRD5/"] $LibLoc:[$TRRDLCR_DB dir:"$dataRoot2/TRRD5/" indexDir:"$indexRoot/TRRD5/"] $LibLoc:[$TRRDSTARTS_DB dir:"$dataRoot2/TRRD5/" indexDir:"$indexRoot/TRRD5/"] # Databanks GeneNet # Last-edition: 20070205 $LibLoc:[$GN_GENE_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_RNA_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_PROTEIN_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_SUBSTANCE_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_RELATION_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_SCHEME_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_SCHEME_CONSTANT_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_SCHEME_ENTITY_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_SCHEME_REACTION_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_SCHEME_RELATION_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_COMPARTMENT_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_ORGANISM_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_PROCESS_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_CELL_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_BIBLIOGRAPHY_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] $LibLoc:[$GN_EXPERT_DB dir:"$dataRoot2/GeneNet/" indexDir:"$indexRoot/GeneNet/"] # Databanks: GERD # Last-edition: 20010226 #$LibLoc:[$GERD_DB dir:"$dataRoot2/GERD/"] # Databanks: LEADER # Last-edition: 20010226 $LibLoc:[$LEADER_SQ_DB dir:"$dataRoot2/LEADER/" indexDir:"$indexRoot/LEADER/"] $LibLoc:[$LEADER_SCI_DB dir:"$dataRoot2/LEADER/" indexDir:"$indexRoot/LEADER/"] $LibLoc:[$LEADER_REF_DB dir:"$dataRoot2/LEADER/" indexDir:"$indexRoot/LEADER/"] $LibLoc:[$LEADER_KN_DB dir:"$dataRoot2/LEADER/" indexDir:"$indexRoot/LEADER/"] $LibLoc:[$LEADER_WHY_DB dir:"$dataRoot2/LEADER/" indexDir:"$indexRoot/LEADER/"] # Databanks: Samples # Last-edition: 20010226 $LibLoc:[$SAMPLES_DB dir:"$dataRoot2/Samples/" indexDir:"$indexRoot/Samples/"] $LibLoc:[$SAMPLE_PROT_DB dir:"$dataRoot2/Samples/" indexDir:"$indexRoot/Samples/"] $LibLoc:[$MATRIX_DB dir:"$dataRoot2/Samples/" indexDir:"$indexRoot/Samples/"] $LibLoc:[$ALIGNED_DB dir:"$dataRoot2/Samples/" indexDir:"$indexRoot/Samples/"] $LibLoc:[$CONSENSUS_DB dir:"$dataRoot2/Samples/" indexDir:"$indexRoot/Samples/"] $LibLoc:[$FEATURES_DB dir:"$dataRoot2/Samples/" indexDir:"$indexRoot/Samples/"] $LibLoc:[$PROFILES_DB dir:"$dataRoot2/Samples/" indexDir:"$indexRoot/Samples/"] $LibLoc:[$PROFILE_LIST_DB dir:"$dataRoot2/Samples/" indexDir:"$indexRoot/Samples/"] # Databanks: act # Last-edition: 20010226 $LibLoc:[$ACTIVITY_DB dir:"$dataRoot2/act/" indexDir:"$indexRoot/act/"] $LibLoc:[$SCIENTIST_DB dir:"$dataRoot2/act/" indexDir:"$indexRoot/act/"] $LibLoc:[$REFERENCE_DB dir:"$dataRoot2/act/" indexDir:"$indexRoot/act/"] $LibLoc:[$WEIGHT_DB dir:"$dataRoot2/act/" indexDir:"$indexRoot/act/"] $LibLoc:[$PROPERTY_DB dir:"$dataRoot2/act/" indexDir:"$indexRoot/act/"] $LibLoc:[$KNOWLEDGE_DB dir:"$dataRoot2/act/" indexDir:"$indexRoot/act/"] # Databanks: enpdb # Last-edition: 20010226 $LibLoc:[$ENPDB_DB dir:"$dataRoot2/enpdb/" indexDir:"$indexRoot/enpdb/"] # Databanks: selex # Last-edition: 20010226 $LibLoc:[$SELEX_DB_DB dir:"$dataRoot2/selex/" indexDir:"$indexRoot/selex/"] $LibLoc:[$SELEX_BIB_DB dir:"$dataRoot2/selex/" indexDir:"$indexRoot/selex/"] $LibLoc:[$SELEX_TOOLS_DB dir:"$dataRoot2/selex/" indexDir:"$indexRoot/selex/"] # Databanks: aspd # Last-edition: 20010504 $LibLoc:[$ASPD_ALIGN_DB dir:"$dataRoot2/aspd/" indexDir:"$indexRoot/aspd/"] $LibLoc:[$ASPD_REF_DB dir:"$dataRoot2/aspd/" indexDir:"$indexRoot/aspd/"] #$LibLoc:[$ASPD_PROT_DB dir:"$dataRoot2/aspd/" indexDir:"$indexRoot/aspd/"] # Databanks: pdbsite # Last-edition: 20010405 $LibLoc:[$PDBSITE_DB dir:"$dataRoot2/pdbsite/" indexDir:"$indexRoot/pdbsite/"] # # Databanks: MEASURE # Last-edition: 20010226 $LibLoc:[$SYSTEM_DB dir:"$dataRoot2/MEASURE/" indexDir:"$indexRoot/MEASURE/"] $LibLoc:[$CROSS_TEST_DB dir:"$dataRoot2/MEASURE/" indexDir:"$indexRoot/MEASURE/"] # # Databanks: rSNP # Last-edition: 20010226 $LibLoc:[$rSNP_DB_DB dir:"$dataRoot2/rSNP/" indexDir:"$indexRoot/rSNP/"] $LibLoc:[$rSNP_BIB_DB dir:"$dataRoot2/rSNP/" indexDir:"$indexRoot/rSNP/"] # # Databanks DB_EIR # Last-edition: 20120411 $LibLoc:[$DB_EIR_DB dir:"$dataRoot2/DB_EIR/" indexDir:"$indexRoot/DB_EIR/"] # # Databanks: trsig # Last-edition: 20130927 $LibLoc:[$TRSIG_EXP_DB dir:"$dataRoot2/trsig/" indexDir:"$indexRoot/trsig/"] $LibLoc:[$TRSIG_LONG_DB dir:"$dataRoot2/trsig/" indexDir:"$indexRoot/trsig/"] $LibLoc:[$TRSIG_OBJ_DB dir:"$dataRoot2/trsig/" indexDir:"$indexRoot/trsig/"] $LibLoc:[$TRSIG_SEQ_DB dir:"$dataRoot2/trsig/" indexDir:"$indexRoot/trsig/"] $LibLoc:[$TRSIG_PRODUCT_DB dir:"$dataRoot2/trsig/" indexDir:"$indexRoot/trsig/"] # # Databanks: transig # Last-edition: 20130927 $LibLoc:[$TRANSIG_OBJ_DB dir:"$dataRoot2/transig/" indexDir:"$indexRoot/transig/"] $LibLoc:[$TRANSIG_ENH_DB dir:"$dataRoot2/transig/" indexDir:"$indexRoot/transig/"] # Databanks: prof_pat # Last-edition: 20011114 #$LibLoc:[$PROF_PAT_ALN dir:"$dataRoot2/prof_pat/" indexDir:"$indexRoot/prof_pat/"] #$LibLoc:[$PROF_PAT_BNK dir:"$dataRoot2/prof_pat/" indexDir:"$indexRoot/prof_pat/"] # Databanks: nucleosome # Last-edition: 20040708 by pnl $LibLoc:[$NUCLEOSOME_DB dir:"$dataRoot2/nucleosome/" indexDir:"$indexRoot/nucleosome/"] # Databanks: tgp # Last-edition: 20060313 $LibLoc:[$TGP_GENE_DB dir:"$dataRoot2/tgp/" indexDir:"$indexRoot/tgp/"] $LibLoc:[$TGP_PROMOTER_DB dir:"$dataRoot2/tgp/" indexDir:"$indexRoot/tgp/"] $LibLoc:[$TGP_SEQUENCE_DB dir:"$dataRoot2/tgp/" indexDir:"$indexRoot/tgp/"] # Databanks: prg # Last-edition: 20150910 $LibLoc:[$PRG_GENE_DB dir:"$dataRoot2/prg/" indexDir:"$indexRoot/prg/"] $LibLoc:[$PRG_ALLELE_DB dir:"$dataRoot2/prg/" indexDir:"$indexRoot/prg/"] $LibLoc:[$PRG_SEQUENCE_DB dir:"$dataRoot2/prg/" indexDir:"$indexRoot/prg/"] # # Databanks: biotech # Last-edition: 20060424 $LibLoc:[$BIOTECH_PRODUCT_DB dir:"$dataRoot2/biotech/" indexDir:"$indexRoot/biotech/"] $LibLoc:[$BIOTECH_STRAIN_DB dir:"$dataRoot2/biotech/" indexDir:"$indexRoot/biotech/"] # Databanks: GenSensor # Last-edition: 20070205 $LibLoc:[$SENSORGENE_DB dir:"$dataRoot2/GenSensor/" indexDir:"$indexRoot/GenSensor/"] $LibLoc:[$SENSORBIB_DB dir:"$dataRoot2/GenSensor/" indexDir:"$indexRoot/GenSensor/"] $LibLoc:[$SENSORINDUCTOR_DB dir:"$dataRoot2/GenSensor/" indexDir:"$indexRoot/GenSensor/"] $LibLoc:[$SENSORPROMOTER_DB dir:"$dataRoot2/GenSensor/" indexDir:"$indexRoot/GenSensor/"] $LibLoc:[$SENSORFACTOR_DB dir:"$dataRoot2/GenSensor/" indexDir:"$indexRoot/GenSensor/"] $LibLoc:[$SENSORSITE_DB dir:"$dataRoot2/GenSensor/" indexDir:"$indexRoot/GenSensor/"] # Databanks: ConSensor # Last-edition: 20070205 $LibLoc:[$CONSTRUCTION_DB dir:"$dataRoot2/ConSensor/" indexDir:"$indexRoot/ConSensor/"] $LibLoc:[$CONSTRUCTIONBIB_DB dir:"$dataRoot2/ConSensor/" indexDir:"$indexRoot/ConSensor/"] $LibLoc:[$CSINDUCTOR_DB dir:"$dataRoot2/ConSensor/" indexDir:"$indexRoot/ConSensor/"] $LibLoc:[$PLANTBIOVIS_DB dir:"$dataRoot2/plantbiovis/" indexDir:"$indexRoot/plantbiovis/"] #$LibLoc:[$CRBIB_DB dir:"$dataRoot2/CR/" indexDir:"$indexRoot/CR/"] #$LibLoc:[$CRGENE_DB dir:"$dataRoot2/CR/" indexDir:"$indexRoot/CR/"] } ] ################################################################## ## DATABANK INTERNAL IDENTIFIERS ################################################################## $srsdb=$SrsDb:[ libIds:{ # main sequence libs $LibId:[1 lib:$EMBLREL_DB] $LibId:[2 lib:$EMBLNEW_DB] $LibId:[5 lib:$EMBL_DB] $LibId:[3 lib:$GENBANKREL_DB] $LibId:[4 lib:$GENBANKNEW_DB] $LibId:[6 lib:$GENBANK_DB] $LibId:[7 lib:$REFSEQ_DB] $LibId:[8 lib:$TREMBL_DB] $LibId:[9 lib:$SWALL_DB] $LibId:[10 lib:$SWISSPROTREL_DB] $LibId:[11 lib:$SWISSPROT_DB] $LibId:[12 lib:$SWISSNEW_DB] $LibId:[13 lib:$PIR_DB] $LibId:[14 lib:$SPTREMBL_DB] $LibId:[15 lib:$REMTREMBL_DB] $LibId:[16 lib:$TREMBLNEW_DB] $LibId:[17 lib:$GENPEPTREL_DB] $LibId:[18 lib:$GENPEPTNEW_DB] $LibId:[20 lib:$GENPEPT_DB] $LibId:[22 lib:$ENSEMBL_DB] # specialised sequence libs $LibId:[31 lib:$NRL3D_DB] $LibId:[32 lib:$IMGT_DB] $LibId:[33 lib:$AAGENESEQ_DB] $LibId:[34 lib:$NAGENESEQ_DB] $LibId:[35 lib:$OGLYC_DB] $LibId:[36 lib:$AAGENESEQTAR_DB] $LibId:[37 lib:$NAGENESEQTAR_DB] # structure databases $LibId:[51 lib:$PDB_DB] $LibId:[52 lib:$PDBNEW_DB] $LibId:[53 lib:$DSSP_DB] $LibId:[54 lib:$HSSP_DB] $LibId:[55 lib:$ALI_DB] $LibId:[56 lib:$FSSP_DB] $LibId:[57 lib:$PDBFINDER_DB] $LibId:[58 lib:$PDBREPORT_DB] # protein domains, alignments patterns etc $LibId:[71 lib:$PROSITE_DB] $LibId:[72 lib:$PROSITEDOC_DB] $LibId:[73 lib:$BLOCKS_DB] $LibId:[74 lib:$DOMO_DB] $LibId:[75 lib:$PRINTS_DB] $LibId:[76 lib:$PFAMA_DB] $LibId:[77 lib:$PFAMB_DB] $LibId:[78 lib:$SWISSPFAM_DB] $LibId:[79 lib:$PFAMHMM_DB] $LibId:[80 lib:$PFAMSEED_DB] $LibId:[81 lib:$PRODOM_DB] # various (seq related) info $LibId:[101 lib:$TAXONOMY_DB] $LibId:[102 lib:$GENETICCODE_DB] $LibId:[103 lib:$ENZYME_DB] $LibId:[104 lib:$REBASE_DB] $LibId:[105 lib:$REBCOMM_DB] $LibId:[1105 lib:$TACGDATA_DB] $LibId:[106 lib:$EPD_DB] # transfac libs $LibId:[130 lib:$TFSITE_DB] $LibId:[131 lib:$TFFACTOR_DB] $LibId:[132 lib:$TFCELL_DB] $LibId:[133 lib:$TFCLASS_DB] $LibId:[134 lib:$TFMATRIX_DB] $LibId:[135 lib:$TFGENE_DB] # radiation hybridization $LibId:[151 lib:$RHDB_DB] $LibId:[152 lib:$RHEXP_DB] $LibId:[153 lib:$RHMAP_DB] $LibId:[154 lib:$RHPANEL_DB] # ets, sts, gss etc $LibId:[201 lib:$DBEST_DB] $LibId:[202 lib:$DBSTS_DB] $LibId:[203 lib:$DBGSS_DB] $LibId:[204 lib:$DBHTG_DB] $LibId:[211 lib:$UNIGENE_DB] # $LibId:[212 lib:$RNUNIGENE_DB] # $LibId:[213 lib:$MMUNIGENE_DB] $LibId:[214 lib:$UNISEQ_DB] # $LibId:[215 lib:$RNUNISEQ_DB] # $LibId:[216 lib:$MMUNISEQ_DB] $LibId:[217 lib:$UNIEST_DB] # $LibId:[218 lib:$RNUNIEST_DB] # $LibId:[219 lib:$MMUNIEST_DB] # mutations $LibId:[300 lib:$OMIM_DB] $LibId:[311 lib:$LOCUSLINK_DB] #metabolic pathways $LibId:[501 lib:$PATHWAY_DB] $LibId:[502 lib:$LENZYME_DB] $LibId:[503 lib:$LCOMPOUND_DB] $LibId:[504 lib:$BRENDA_DB] $LibId:[505 lib:$PATHWAYTAR_DB] #application results $LibId:[1021 lib:$FASTA_DB] $LibId:[1022 lib:$FASTX_DB] $LibId:[1023 lib:$FASTY_DB] # do not use LibId 1024 ! $LibId:[1025 lib:$TFASTA_DB] $LibId:[1026 lib:$TFASTX_DB] $LibId:[1027 lib:$TFASTY_DB] $LibId:[1028 lib:$NFASTA_DB] $LibId:[1029 lib:$SSEARCH_DB] $LibId:[1030 lib:$FASTS_DB] $LibId:[1041 lib:$BLASTP_DB] $LibId:[1042 lib:$BLASTN_DB] $LibId:[1043 lib:$BLASTX_DB] $LibId:[1044 lib:$TBLASTN_DB] $LibId:[1045 lib:$TBLASTX_DB] $LibId:[1046 lib:$PSIBLAST_DB] $LibId:[1004 lib:$SW_DB] $LibId:[1005 lib:$CLUSTALW_DB] $LibId:[1006 lib:$NCLUSTALW_DB] $LibId:[1007 lib:$PPSEARCH_DB] $LibId:[1017 lib:$TACG_DB] $LibId:[1008 lib:$PROSITESEARCH_DB] $LibId:[1009 lib:$RESTRICTIONMAP_DB] $LibId:[1010 lib:$HMMPFAM_DB] $LibId:[1011 lib:$HMMSEARCH_DB] $LibId:[1012 lib:$HMMBUILD_DB] $LibId:[1020 lib:$CPG_DB] $LibId:[1031 lib:$OLIGOBLAST_DB] $LibId:[1040 lib:$PRINTSCAN_DB] $LibId:[1039 lib:$WF_DB] # OLD STUFF # $LibId:[55 lib:$FLYGENE_DB] # $LibId:[46 lib:$ECDC_DB] # $LibId:[47 lib:$MIM_DB] # $LibId:[48 lib:$MIMMAP_DB] # $LibId:[51 lib:$CPGISLE_DB] # $LibId:[52 lib:$MOLPROBE_DB] # $LibId:[56 lib:$FLYREFS_DB] # $LibId:[65 lib:$PIRALN_DB] # $LibId:[66 lib:$YPD_DB] # $LibId:[67 lib:$MPW_DB] # $LibId:[68 lib:$HSAGENES_DB] # $LibId:[69 lib:$EMP_DB] # $LibId:[79 lib:$UTR_DB] # $LibId:[80 lib:$KEYNET_DB] # $LibId:[81 lib:$SEQANALREF_DB] # $LibId:[82 lib:$SEQANALRABS_DB] # $LibId:[83 lib:$PROTSTRUCTLIT_DB] # $LibId:[90 lib:$MEDLINE_DB] # $LibId:[91 lib:$YPDREF_DB] # $LibId:[101 lib:$NAKAI_DB] # $LibId:[102 lib:$LIMB_DB] # $LibId:[170 lib:$PROTEINSEQ_DB] # $LibId:[171 lib:$DNASEQ_DB] # $LibId:[172 lib:$PROTEINALIGN_DB] # $LibId:[173 lib:$PROFILE_DB] # databanks for mutations and aberrations # $LibId:[147 lib:$MUTRES_DB] # $LibId:[157 lib:$EMBLCHANGE_DB] # $LibId:[156 lib:$SWISSCHANGE_DB] # $LibId:[155 lib:$OMIMALLELE_DB] # $LibId:[54 lib:$PMD_DB] # $LibId:[161 lib:$MMTDB_DB] # $LibId:[130 lib:$P53_DB] # $LibId:[131 lib:$APC_DB] # $LibId:[134 lib:$BTKBASE_DB] # $LibId:[135 lib:$VWF_DB] # $LibId:[136 lib:$CFTR_DB] # $LibId:[137 lib:$PAH_DB] # $LibId:[138 lib:$HAEMA_DB] # $LibId:[139 lib:$HAEMB_DB] # $LibId:[140 lib:$LDLR_DB] # $LibId:[141 lib:$PAX6_DB] # $LibId:[142 lib:$SPECTRA_DB] # $LibId:[143 lib:$SPECTRASET_DB] # $LibId:[144 lib:$COL1_DB] # $LibId:[145 lib:$EMD_DB] # $LibId:[146 lib:$L1CAM_DB] # $LibId:[148 lib:$CD40LBASE_DB] # $LibId:[149 lib:$G6PD_DB] # $LibId:[150 lib:$ANDROGENR_DB] # $LibId:[151 lib:$RDS_DB] # $LibId:[152 lib:$RHODOPSIN_DB] # $LibId:[153 lib:$FANCONI_DB] # $LibId:[154 lib:$HEXA_DB] # $LibId:[158 lib:$XCGDBASE_DB] # $LibId:[159 lib:$DMD_DB] # $LibId:[160 lib:$FLYPEOPLE_DB] # $LibId:[180 lib:$GQENTRY_DB] # $LibId:[181 lib:$GQSUM_DB] # $LibId:[230 lib:$REPTILIA_DB] # $LibId:[231 lib:$REPTAX_DB] # $LibId:[232 lib:$MEDIA_DB] # $LibId:[240 lib:$ZOPPO_DB] # $LibId:[249 lib:$BITS_DB] # $LibId:[250 lib:$DATABANKS_DB] # $LibId:[248 lib:$HOWTOS_DB] # $LibId:[251 lib:$CFUNC_DB] # $LibId:[252 lib:$SRSUPD_DB] # XML databases # $LibId:[1051 lib:$INTERPROXML_DB] $LibId:[1051 lib:$INTERPRO_DB] # the two demo databanks $LibId:[1100 lib:$GENES_DB] $LibId:[1101 lib:$REFLIST_DB] # srs docs and things $LibId:[2001 lib:$SRSFAQ_DB] $LibId:[2006 lib:$SRSBOOKS_DB] $LibId:[2007 lib:$CLASSCOM_DB] $LibId:[2008 lib:$SRSAPI_DB] $LibId:[2100 lib:$USERDNA_DB] $LibId:[2101 lib:$USERPROTEIN_DB] $LibId:[2400 lib:$PRISMASTATUS_DB] $LibId:[2401 lib:$PRISMATIME_DB] $LibId:[2402 lib:$SRSERRCODES_DB] # internal tracking $LibId:[ 10000 lib:$JOBS_DB ] # These libIds are known to result in bizarre behaviour # when used for a database. So don't use them $LibId:[512 lib:$DONOTUSETHISLIBID_DB] $LibId:[1024 lib:$DONOTUSETHISLIBID_DB] $LibId:[2048 lib:$DONOTUSETHISLIBID_DB] $LibId:[4096 lib:$DONOTUSETHISLIBID_DB] $LibId:[8192 lib:$DONOTUSETHISLIBID_DB] $LibId:[16512 lib:$DONOTUSETHISLIBID_DB] $LibId:[64000 lib:$DONOTUSETHISLIBID_DB] ######################################## # Databanks: TRRD5 # Last-edition: 20020227 $LibId:[ 5000 lib:$TRRDGENES4_DB] $LibId:[ 5001 lib:$TRRDSITES4_DB] $LibId:[ 5002 lib:$TRRDUNITS4_DB] $LibId:[ 5003 lib:$TRRDFACTORS4_DB] $LibId:[ 5004 lib:$TRRDEXP4_DB] $LibId:[ 5005 lib:$TRRDBIB4_DB] $LibId:[ 5006 lib:$TRRDLCR_DB] $LibId:[ 5007 lib:$TRRDSTARTS_DB] # Databanks GeneNet # Last-edition: 20010226 #$LibId:[ 5010 lib:$GN_GENE_DB] #$LibId:[ 5011 lib:$GN_RNA_DB] #$LibId:[ 5012 lib:$GN_PROTEIN_DB] #$LibId:[ 5013 lib:$GN_SUBSTANCE_DB] #$LibId:[ 5014 lib:$GN_RELATION_DB] #$LibId:[ 5015 lib:$GN_SCHEME_DB] #$LibId:[ 5016 lib:$GN_SCHEME_ENTITY_DB] #$LibId:[ 5017 lib:$GN_SCHEME_RELATION_DB] #$LibId:[ 5018 lib:$GN_COMPARTMENT_DB] #$LibId:[ 5019 lib:$GN_ORGANISM_DB] #$LibId:[ 5020 lib:$GN_PROCESS_DB] #$LibId:[ 5021 lib:$GN_CELL_DB] #$LibId:[ 5022 lib:$GN_BIBLIOGRAPHY_DB] #$LibId:[ 5023 lib:$GN_EXPERT_DB] #$LibId:[ 5024 lib:$GN_SCHEME_CONSTANT_DB] #$LibId:[ 5025 lib:$GN_SCHEME_REACTION_DB] #adding 20070205 $LibId:[ 5010 lib:$GN_GENE_DB] $LibId:[ 5011 lib:$GN_RNA_DB] $LibId:[ 5012 lib:$GN_PROTEIN_DB] $LibId:[ 5013 lib:$GN_SUBSTANCE_DB] $LibId:[ 5014 lib:$GN_RELATION_DB] $LibId:[ 5015 lib:$GN_SCHEME_DB] $LibId:[ 5016 lib:$GN_SCHEME_CONSTANT_DB] $LibId:[ 5017 lib:$GN_SCHEME_ENTITY_DB] $LibId:[ 5018 lib:$GN_SCHEME_REACTION_DB] $LibId:[ 5019 lib:$GN_SCHEME_RELATION_DB] $LibId:[ 5020 lib:$GN_COMPARTMENT_DB] $LibId:[ 5021 lib:$GN_ORGANISM_DB] $LibId:[ 5022 lib:$GN_PROCESS_DB] $LibId:[ 5023 lib:$GN_CELL_DB] $LibId:[ 5024 lib:$GN_BIBLIOGRAPHY_DB] $LibId:[ 5025 lib:$GN_EXPERT_DB] # Databanks: GERD # Last-edition: 20010226 #$LibId:[ 5025 lib:$GERD_DB] # Databanks: LEADER # Last-edition: 20010226 $LibId:[ 5030 lib:$LEADER_SQ_DB] $LibId:[ 5031 lib:$LEADER_REF_DB] $LibId:[ 5032 lib:$LEADER_SCI_DB] $LibId:[ 5033 lib:$LEADER_KN_DB] $LibId:[ 5034 lib:$LEADER_WHY_DB] # Databanks: Samples # Last-edition: 20010226 $LibId:[ 5040 lib:$SAMPLES_DB] $LibId:[ 5041 lib:$CONSENSUS_DB] $LibId:[ 5042 lib:$MATRIX_DB] $LibId:[ 5043 lib:$ALIGNED_DB] $LibId:[ 5044 lib:$FEATURES_DB] $LibId:[ 5045 lib:$PROFILES_DB] $LibId:[ 5046 lib:$PROFILE_LIST_DB] $LibId:[ 5047 lib:$SAMPLE_PROT_DB] # Databanks: act # Last-edition: 20010226 $LibId:[ 5050 lib:$ACTIVITY_DB] $LibId:[ 5051 lib:$REFERENCE_DB] $LibId:[ 5052 lib:$SCIENTIST_DB] $LibId:[ 5053 lib:$WEIGHT_DB] $LibId:[ 5054 lib:$KNOWLEDGE_DB] $LibId:[ 5055 lib:$PROPERTY_DB] # Databanks: enpdb # Last-edition: 20010226 $LibId:[ 5060 lib:$ENPDB_DB] # Databanks: selex # Last-edition: 20010226 $LibId:[ 5070 lib:$SELEX_DB_DB] $LibId:[ 5071 lib:$SELEX_BIB_DB] $LibId:[ 5072 lib:$SELEX_TOOLS_DB] # Databanks: aspd # Last-edition: 20010504 $LibId:[ 5080 lib:$ASPD_ALIGN_DB] $LibId:[ 5081 lib:$ASPD_REF_DB] #$LibId:[ 5082 lib:$ASPD_PROT_DB] # Databanks: pdbsite # Last-edition: 20010405 $LibId:[ 5090 lib:$PDBSITE_DB] # Databanks: MEASURE # Last-edition: 20010226 $LibId:[ 5110 lib:$SYSTEM_DB] $LibId:[ 5111 lib:$CROSS_TEST_DB] # # Databanks: rSNP # Last-edition: 20020314 $LibId:[ 5121 lib:$rSNP_DB_DB] $LibId:[ 5122 lib:$rSNP_BIB_DB] # # Databanks: trsig # Last-edition: 20040427 $LibId:[ 5140 lib:$TRSIG_EXP_DB] $LibId:[ 5141 lib:$TRSIG_LONG_DB] $LibId:[ 5142 lib:$TRSIG_OBJ_DB] $LibId:[ 5143 lib:$TRSIG_SEQ_DB] $LibId:[ 5144 lib:$TRSIG_PRODUCT_DB] # # Databanks: transig # Last-edition: 20130927 $LibId:[ 5145 lib:$TRANSIG_OBJ_DB] $LibId:[ 5146 lib:$TRANSIG_ENH_DB] # Databanks: DB_EIR # Last-edition: 20120411 $LibId:[ 5150 lib:$DB_EIR_DB] # # # Databanks: prof_pat # Last-edition: 20011114 #$LibId:[ 5150 lib:$PROF_PAT_ALN] #$LibId:[ 5151 lib:$PROF_PAT_BNK] # Databanks: nucleosome # Last-edition: 20040708 by pnl $LibId:[ 5180 lib:$NUCLEOSOME_DB] # Databanks: tgp # Last-edition: 20060313 $LibId:[ 5190 lib:$TGP_GENE_DB] $LibId:[ 5191 lib:$TGP_PROMOTER_DB] $LibId:[ 5192 lib:$TGP_SEQUENCE_DB] # Databanks: biotech # Last-edition: 20060424 $LibId:[ 5200 lib:$BIOTECH_PRODUCT_DB] $LibId:[ 5201 lib:$BIOTECH_STRAIN_DB] # Databanks: GenSensor # Last-edition: 20070205 $LibId:[ 5220 lib:$SENSORGENE_DB] $LibId:[ 5221 lib:$SENSORBIB_DB] $LibId:[ 5222 lib:$SENSORINDUCTOR_DB] $LibId:[ 5223 lib:$SENSORPROMOTER_DB] $LibId:[ 5224 lib:$SENSORFACTOR_DB] $LibId:[ 5225 lib:$SENSORSITE_DB] # Databanks: ConSensor # Last-edition: 20070205 $LibId:[ 5230 lib:$CONSTRUCTION_DB] $LibId:[ 5231 lib:$CONSTRUCTIONBIB_DB] $LibId:[ 5232 lib:$CSINDUCTOR_DB] # Databanks: PlantBioVis # Last-edition: 20080414 $LibId:[ 5241 lib:$PLANTBIOVIS_DB] # Databanks: CircadianRhythm # Last-edition: 20130805 #$LibId:[ 5242 lib:$CRBIB_DB] #$LibId:[ 5243 lib:$CRGENE_DB] # Databanks: prg # Last-edition: 20150910 $LibId:[ 5250 lib:$PRG_GENE_DB] $LibId:[ 5251 lib:$PRG_ALLELE_DB] $LibId:[ 5252 lib:$PRG_SEQUENCE_DB] } ] file:"SRSDB:apiclassinst.i"SRS error