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Name

TRRDUNITS4

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Status The current release has 3490 entries and was indexed 03-Nov-2015.
Description The Transcription Regulatory Regions Database (TRRD Rel.6.x) collects information
on structural and functional organisation of transcription regulatory regions
of eukaryotic genes. The hierarchical organisation of transcription regulatory
regions of eukaryotic genomes is put into the database schema. It includes
the following information:
  • transcription factor binding sites
  • eukaryotic gene promoters, enhancers
  • transcription regulatory regions
  • gene expression regulation
  • corresponding bibliography references
Literature Kolchanov NA, Ignatieva EV, Ananko EA, Podkolodnaya OA, Stepanenko IL,
Merkulova TI, Pozdnyakov MA, Podkolodny NL, Naumochkin AN, Romashchenko AG.
Transcription Regulatory Regions Database (TRRD): its status in 2002. ( in PDF )
Nucleic Acids Res., 30, 1, 312-317 [PMID: 11752324]
WWW WWW site
Data-fields in SRS
Name Short Name Type No of Keys No of Entry References Indexing Date Status
RegUnitAC
GeneID
RegRegion
RegUnit
DNA_BankLink
LeftTrunc
RightTrunc
SeqLength
PromotTisSp
PromotInd
MultipleStarts
ExperimentCodes
id
gn
rg
pr
aq
lq
rq
sl
pt
pi
ms
ag
id
index
index
index
index
index
index
index
index
index
index
index
3490
2086
28
706
3959
232
114
1072
4
3
0
3645
3490
3490
3490
3490
12564
4188
4188
4188
1969
889
0
43808
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
ok
ok
ok
ok
ok
ok
ok
ok
ok
ok
ok
ok
Links
From Databank Entries Linked To Databank Entries Linked Links Total Indexing Date
TRRDGENES4 2086 TRRDUNITS4 3490 3490 03-Nov-2015
TRRDSITES4 10135 TRRDUNITS4 2744 10135 03-Nov-2015
TRRDEXP4 1545 TRRDUNITS4 823 1799 03-Nov-2015
TRRDUNITS4 3490 TRRDGENES4 2086 3490 03-Nov-2015
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS 6.1.3.11 |  feedback