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Name

TRRDSITES4

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Status The current release has 10135 entries and was indexed 03-Nov-2015.
Description The Transcription Regulatory Regions Database (TRRD Rel.6.x) collects information
on structural and functional organisation of transcription regulatory regions
of eukaryotic genes. The hierarchical organisation of transcription regulatory
regions of eukaryotic genomes is put into the database schema. It includes
the following information:
  • transcription factor binding sites
  • eukaryotic gene promoters, enhancers
  • transcription regulatory regions
  • gene expression regulation
  • corresponding bibliography references
Literature Kolchanov NA, Ignatieva EV, Ananko EA, Podkolodnaya OA, Stepanenko IL,
Merkulova TI, Pozdnyakov MA, Podkolodny NL, Naumochkin AN, Romashchenko AG.
Transcription Regulatory Regions Database (TRRD): its status in 2002. ( in PDF )
Nucleic Acids Res., 30, 1, 312-317 [PMID: 11752324]
WWW WWW site
Data-fields in SRS
Name Short Name Type No of Keys No of Entry References Indexing Date Status
SiteAC
SiteName
GeneID
PreferredName
RegUnitAC
SiteNameSynonym
PredictionProgramLink
DatabaseReference
TransFacSiteReference
SiteIndex
FactorName
FactorInfluence
DNA_BankLink
SeqContradiction
PosContradiction
ImportantPos
ExperimentCodes
SiteHomology
ComparativeFactorAffinity
TextComments
id
NM
gid
NP
AP
NY
WW
DR
NS
NI
TF
AT
BF
SC
PC
IP
AG
HM
EF
KK
id
index
index
index
index
index
index
index
index
index
index
index
index
index
index
index
index
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10135
5187
1953
586
2744
1503
2
94
640
2
2302
2
2123
0
0
3232
4425
0
0
0
10135
20270
10135
14541
10135
6419
1197
7524
726
6071
9087
5338
10025
0
0
3402
119458
0
0
0
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Links
From Databank Entries Linked To Databank Entries Linked Links Total Indexing Date
TRRDGENES4 1953 TRRDSITES4 10135 10135 03-Nov-2015
TRRDSITES4 10135 TRRDGENES4 1953 10135 03-Nov-2015
TRRDSITES4 5254 TRRDFACTORS4 9087 423471 03-Nov-2015
TRRDSITES4 1384 TRRDEXP4 1131 2349 03-Nov-2015
TRRDSITES4 10135 TRRDBIB4 6997 66540 03-Nov-2015
TRRDSITES4 10135 TRRDUNITS4 2744 10135 03-Nov-2015
TRRDSITES4 815 SAMPLES 33 815 03-Nov-2015
TRRDFACTORS4 9087 TRRDSITES4 5254 599299 03-Nov-2015
TRRDEXP4 1131 TRRDSITES4 1384 2349 03-Nov-2015
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS 6.1.3.11 |  feedback