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Name

TRRDGENES4

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Status The current release has 2344 entries and was indexed 03-Nov-2015.
Description The Transcription Regulatory Regions Database (TRRD Rel.6.x) collects information
on structural and functional organisation of transcription regulatory regions
of eukaryotic genes. The hierarchical organisation of transcription regulatory
regions of eukaryotic genomes is put into the database schema. It includes
the following information:
  • transcription factor binding sites
  • eukaryotic gene promoters, enhancers
  • transcription regulatory regions
  • gene expression regulation
  • corresponding bibliography references
Literature Kolchanov NA, Ignatieva EV, Ananko EA, Podkolodnaya OA, Stepanenko IL,
Merkulova TI, Pozdnyakov MA, Podkolodny NL, Naumochkin AN, Romashchenko AG.
Transcription Regulatory Regions Database (TRRD): its status in 2002. ( in PDF )
Nucleic Acids Res., 30, 1, 312-317 [PMID: 11752324]
WWW WWW site
Data-fields in SRS
Name Short Name Type No of Keys No of Entry References Indexing Date Status
GeneAC
GeneID
Updated
TransfacLink
Species
GeneName
GeneName_Brief
GeneName_Full
GeneSynonym
EnzymeClass
KeyWords
Chromosome
RegRegion
RegUnitAC
RegUnit
ExperimentCodes
MultipleTranscriptionStart
CompElement
Alignment
StartPoints
DNABankLink
Comments
HSS_AC
HSS_Position
HSS_Descript
HSS_Reference
HSS_Genes
HSS_Comments
BankLink
AC
id
DT
GN
OS
NA
SN
NG
SY
EC
KW
CH
RG
AP
PR
AG
MS
CE
AL
MP
BI
CC
HN
HS
HD
HR
HG
HC
DR
id
index
show
index
index
index
index
index
index
index
index
index
index
index
index
index
index
index
show
index
index
show
index
index
index
index
index
index
index
2344
2344
0
527
206
8358
1859
1927
4837
234
682
1147
28
3490
11967
3645
234
0
0
41
4322
0
203
317
136
71
9
192
14928
2344
2344
0
527
4655
10491
2344
2350
5797
458
7786
1883
2305
3490
15715
43808
238
0
0
406
7989
0
203
697
506
214
43
429
55809
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ok
ok
not indexed
ok
ok
ok
ok
ok
ok
ok
ok
ok
ok
ok
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not indexed
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not indexed
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Links
From Databank Entries Linked To Databank Entries Linked Links Total Indexing Date
TRRDGENES4 1448 TRRDFACTORS4 9087 9087 03-Nov-2015
TRRDGENES4 2344 TRRDBIB4 7609 7609 03-Nov-2015
TRRDGENES4 1964 TRRDEXP4 14407 14407 03-Nov-2015
TRRDGENES4 1953 TRRDSITES4 10135 10135 03-Nov-2015
TRRDGENES4 2086 TRRDUNITS4 3490 3490 03-Nov-2015
TRRDSITES4 10135 TRRDGENES4 1953 10135 03-Nov-2015
TRRDBIB4 7609 TRRDGENES4 2344 7609 03-Nov-2015
TRRDFACTORS4 9087 TRRDGENES4 1448 9087 03-Nov-2015
TRRDEXP4 14407 TRRDGENES4 1964 14407 03-Nov-2015
TRRDUNITS4 3490 TRRDGENES4 2086 3490 03-Nov-2015
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS 6.1.3.11 |  feedback