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Name

TRRDEXP4

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Status The current release has 14407 entries and was indexed 03-Nov-2015.
Description The Transcription Regulatory Regions Database (TRRD Rel.6.x) collects information
on structural and functional organisation of transcription regulatory regions
of eukaryotic genes. The hierarchical organisation of transcription regulatory
regions of eukaryotic genomes is put into the database schema. It includes
the following information:
  • transcription factor binding sites
  • eukaryotic gene promoters, enhancers
  • transcription regulatory regions
  • gene expression regulation
  • corresponding bibliography references
Literature Kolchanov NA, Ignatieva EV, Ananko EA, Podkolodnaya OA, Stepanenko IL,
Merkulova TI, Pozdnyakov MA, Podkolodny NL, Naumochkin AN, Romashchenko AG.
Transcription Regulatory Regions Database (TRRD): its status in 2002. ( in PDF )
Nucleic Acids Res., 30, 1, 312-317 [PMID: 11752324]
WWW WWW site
Data-fields in SRS
Name Short Name Type No of Keys No of Entry References Indexing Date Status
ExpressionPatternAC
GeneID
ExpressionDetectionDevice
CellCycleStage
StageOrgDev
Organ
Tissue
Cells
StageCellDiff
ExpressionLevel
IndReprName
InductionTime
Influence
RegUnitLink
SiteLink
Comments
Reference
ExpComparison
TextComments
Sex
RE
id
RT
RY
RD
RO
RU
RN
RF
RL
RI
RH
FF
RP
RS
RC
RR
RM
CC
RX
id
index
index
index
index
index
index
index
index
index
index
index
index
index
index
show
index
index
show
index
14407
1964
230
20
494
754
203
1505
35
11
1201
72
4
823
1384
0
0
1
0
2
14407
14407
13921
338
5076
11341
1583
8933
937
13562
9350
6133
6121
1799
2349
0
0
1
0
528
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015
03-Nov-2015

03-Nov-2015
03-Nov-2015

03-Nov-2015
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Links
From Databank Entries Linked To Databank Entries Linked Links Total Indexing Date
TRRDGENES4 1964 TRRDEXP4 14407 14407 03-Nov-2015
TRRDSITES4 1384 TRRDEXP4 1131 2349 03-Nov-2015
TRRDFACTORS4 7907 TRRDEXP4 9690 103188 03-Nov-2015
TRRDEXP4 14407 TRRDGENES4 1964 14407 03-Nov-2015
TRRDEXP4 1131 TRRDSITES4 1384 2349 03-Nov-2015
TRRDEXP4 9690 TRRDFACTORS4 7907 103188 03-Nov-2015
TRRDEXP4 14407 TRRDBIB4 6816 131352 03-Nov-2015
TRRDEXP4 1545 TRRDUNITS4 823 1799 03-Nov-2015
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS 6.1.3.11 |  feedback